STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBO1107Putative lipoprotein. (412 aa)    
Predicted Functional Partners:
potB-2
Putative polyamine transport system, permease protein.
 
  
  0.996
CBO1109
Putative polyamine transport system, permease protein.
 
  
  0.995
CBO2613
Hypothetical protein; No significant database matches.
 
     0.792
potA-2
Putative polyamine transport system, ATP-binding protein; Belongs to the ABC transporter superfamily.
 
     0.756
CBO2612
Putative iron-sulfur protein.
 
     0.741
CBO2621
Putative inosine-uridine preferring nucleoside hydrolase.
 
     0.735
CBO2610
DedA family membrane protein.
 
  
 0.723
CBO1141
Putative thiosulfate sulfurtransferase.
 
  
 0.665
CBO2611
DedA family membrane protein; Similar to Clostridium perfringens hypothetical protein CPE1612 SWALL:Q8XJZ1 (EMBL:AP003191) (217 aa) fasta scores: E(): 9e-33, 48.84 38d in 217 aa. CDS is extended at the C-terminus in comparison to orthologues,possible frame shift mutation in the C-terminal region.
 
  
 0.640
CBO0356
Putative membrane protein; Similar to Clostridium tetani membrane spanning protein ctc01769 SWALL:Q893P4 (EMBL:AE015942) (220 aa) fasta scores: E(): 4.7e-43, 51.61 38d in 217 aa.
 
  
 0.572
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.