STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
potB-2Putative polyamine transport system, permease protein. (288 aa)    
Predicted Functional Partners:
potCD
Spermidine/putrescine transport system permease protein; The N-terminal and C-terminal halves of this CDS are similar to Escherichia coli PotC and PotD,respectively. This indicate that this CDS resulted from a fusion between two adjacent CDSs.
 
  
0.999
CBO1109
Putative polyamine transport system, permease protein.
 
 0.999
CBO1107
Putative lipoprotein.
 
  
  0.996
potA-2
Putative polyamine transport system, ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 
 0.959
potA
Spermidine/putrescine transport ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.
 
 
 0.808
CBO1155
Putative iron ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 
 0.799
CBO2613
Hypothetical protein; No significant database matches.
 
     0.775
CBO2612
Putative iron-sulfur protein.
 
     0.716
cbiQ
Putative cobalt transport protein.
      
 0.664
CBO2621
Putative inosine-uridine preferring nucleoside hydrolase.
 
     0.635
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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