STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBO1154Putative iron ABC transporter, permease protein. (562 aa)    
Predicted Functional Partners:
CBO1153
Putative iron ABC transporter, solute-binding lipoprotein.
 
 
 0.998
CBO1155
Putative iron ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 
 0.990
CBO3587
Putative phosphoesterase.
 
     0.751
potA
Spermidine/putrescine transport ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.
 
  
 0.678
potA-2
Putative polyamine transport system, ATP-binding protein; Belongs to the ABC transporter superfamily.
 
  
 0.611
CBO1152
Putative peptidase.
     
 0.570
CBO0093
Putative cations transporter; Similar to Bacillus subtilis SapB protein or bsu06650 SWALL:SAPB_BACSU (SWALL:Q45514) (232 aa) fasta scores: E(): 7.7e-13, 28.15 38d in 206 aa, and to Clostridium perfringens probable Mg2+ transport protein cpe0592 SWALL:Q8XMU6 (EMBL:AP003187) (241 aa) fasta scores: E(): 1.2e-27, 39.24 38d in 237 aa.
       0.461
CBO1151
ABC transporter, substrate-binding lipoprotein.
     
 0.442
CBO1150
ABC transporter, permease protein.
  
  
 0.434
CBO0974
Putative iron(III) dicitrate-binding protein.
  
    0.425
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.