STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBO1212Putative chitinase/spore peptidoglycan hydrolase; Belongs to the glycosyl hydrolase 18 family. (504 aa)    
Predicted Functional Partners:
pdaB
Probable polysaccharide deacetylase.
    
 0.767
CBO1211
Putative exported protein; No significant database matches. CDS contains imperfect repeat regions rich in lysine, glutamic acid and asparagine.
       0.576
CBO1374
Putative gamma-D-glutamyl-L-diamino acid endopeptidase.
     0.543
CBO1297
Putative membrane-associated glycosyl transferase.
      0.541
CBO3618
Conserved hypothetical protein.
  
     0.510
cwlJ
Putative cell wall hydrolase.
 
   
 0.469
guaA
GMP synthase [glutamine-hydrolyzing]; Catalyzes the synthesis of GMP from XMP.
       0.465
CBO1213
Putative signaling protein.
  
    0.462
CBO1208
Conserved hypothetical protein.
 
   
 0.448
CBO2925
Hypothetical protein; No significant database matches.
  
    0.446
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.