STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
appAPutative oligopeptide ABC transporter,substrate-binding protein. (532 aa)    
Predicted Functional Partners:
appC
Putative oligopeptide ABC transporter, permease protein.
 0.992
appB
Putative oligopeptide ABC transporter, permease protein.
 0.992
CBO1224
Transporter, ATP-binding protein.
  
 
 0.927
CBO1356
ABC transporter, permease protein.
 
 0.879
CBO1357
ABC transporter, permease protein.
 
 
 0.878
oppC
Oligopeptide transport system permease protein.
 
 
 0.860
oppB
Oligopeptide ABC transporter, permease protein.
 
 0.855
CBO1677
Oligopeptide transport system, permease protein.
 
 
 0.852
CBO1676
Oligopeptide transport system permease protein.
 
 0.848
CBO3264
Putative extracellular solute-binding protein.
 
 
 0.835
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.