Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBO1233Conserved hypothetical protein. (163 aa)    
Predicted Functional Partners:
CBO0130
Similar to Clostridium tetani conserved protein ctc00293 SWALL:Q898Z3 (EMBL:AE015936) (143 aa) fasta scores: E(): 1.5e-24, 54.22 38d in 142 aa, and to Clostridium acetobutylicum uncharacterized protein, ywib b.subtilis homolog cac2894 SWALL:Q97F59 (EMBL:AE007787) (137 aa) fasta scores: E(): 1.7e-20, 52.55 38d in 137 aa.
   
    0.525
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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