Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBO1369ABC transporter, permease protein. (253 aa)    
Predicted Functional Partners:
CBO1368
Putative ABC transporter, substrate-binding lipoprotein.
 
 
 0.991
CBO1370
ABC transporter, ATP-binding protein; This CDS is shorter at the C-terminus relative to most database matches.
 
 0.972
CBO3247
Putative ABC transporter ATP-binding protein.
 
 0.856
CBO3254
Putative lipoprotein; Appears to have an extended C-terminus compared to most homologues.
 
 
 0.843
CBO3171
Putative ABC transporter ATP binding protein.
 
 0.803
CBO3169
Putative ABC transporter, periplasmic-binding protein.
  
 
 0.800
CBO2773
Conserved hypothetical protein.
    
 
 0.444
hymB
Putative electron-transferring subunit of iron-only hydrogenase.
       0.410
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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