Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CBO1372Putative ferric uptake regulatory protein. (157 aa)    
Predicted Functional Partners:
CBO0395
Similar to Campylobacter jejuni ferric uptake regulation protein Fur or cj0400 SWALL:FUR_CAMJE (SWALL:P48796) (157 aa) fasta scores: E(): 3.3e-08, 27.69 id in 130 aa, and to Bacillus subtilis peroxide operon regulator PerR or bsu08730 SWALL:PERR_BACSU (SWALL:P71086) (145 aa) fasta scores: E(): 4.8e-08, 30.76 38d in 130 aa; Belongs to the Fur family.
  
   
 0.906
CBO1373
Conserved hypothetical protein; Belongs to the UPF0251 family.
 
     0.857
CBO0847
DNA-binding protein.
   
  
 0.684
CBO0845
Putative ABC transporter, membrane protein.
      
 0.681
CBO0846
ABC transporter, ATP-binding protein.
      
 0.681
CBO2610
DedA family membrane protein.
      
 0.681
CBO2612
Putative iron-sulfur protein.
      
 0.681
CBO2614
Putative glycosyl transferase.
      
 0.681
CBO3612
Conserved hypothetical protein.
  
    0.522
CBO1374
Putative gamma-D-glutamyl-L-diamino acid endopeptidase.
  
    0.516
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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