Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CBO1450Putative hemolysin; Also similar to CBO1589 (34.9 38d.). (212 aa)    
Predicted Functional Partners:
CBO1880
Putative methyltransferase.
     
 0.761
CBO3104
Putative capsular polysaccharide biosynthesis leucine rich repeat protein; Similar to N-terminal region of Bacillus cereus internalin protein bc0552 SWALL:Q81I65 (EMBL:AE016999) (886 aa) fasta scores: E(): 7.1e-21, 30.16 38d in 358 aa,and to C-terminal region of Clostridium acetobutylicum possible surface protein, responsible for cell interaction, contains cell adhesion domain and chw-repeats cac3279 SWALL:Q97E37 (EMBL:AE007824) (808 aa) fasta scores: E(): 3.3e-26, 35.25 38d in 312 aa.
      
 0.636
ychF
Putative GTP-binding protein; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner.
       0.511
closI
Alpha-clostripain precursor.
      
 0.470
gyrB-2
DNA gyrase subunit B.
      
 0.450
ribD
Diaminohydroxyphosphoribosylaminopyrimidine deaminase; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
      
 0.439
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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