Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBO1584Putative lantibiotic ABC transporter, permease protein. (247 aa)    
Predicted Functional Partners:
CBO1582
Putative lantibiotic ABC transporter,ATP-binding protein.
 
 
 0.997
CBO1583
Putative lantibiotic ABC transporter, permease protein.
 
  
 0.997
CBO1586
Two-component sensor histidine kinase.
 
  
  0.989
CBO1585
Two-component response regulator.
 
 
  0.988
CBO1925
Two-component sensor kinase.
 
   
 0.522
CBO2283
ABC transporter, ATP-binding protein.
 
  
 0.495
CBO0777
ABC transporter, ATP-binding protein.
 
  
 0.472
CBO1364
Putative membrane protein; Limited similarity to the database matches mentioned.
  
     0.470
CBO1581
Putative membrane protein.
       0.406
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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