Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
CBO0408 | CBO1594 | Similar to Clostridium tetani conserved protein ctc02189 SWALL:Q892B6 (EMBL:AE015943) (314 aa) fasta scores: E(): 1.3e-78, 69.8 38d in 308 aa. | Hypothetical protein; No significant database matches; Highly similar to CBO0900 (85.5 38d), CBO2273 (85.5 38d) and CBO2267 (93.7 0d). | 0.499 |
CBO0408 | CBO3364 | Similar to Clostridium tetani conserved protein ctc02189 SWALL:Q892B6 (EMBL:AE015943) (314 aa) fasta scores: E(): 1.3e-78, 69.8 38d in 308 aa. | Conserved hypothetical protein. | 0.419 |
CBO1012 | CBO1594 | MarR-family transcriptional regulator. | Hypothetical protein; No significant database matches; Highly similar to CBO0900 (85.5 38d), CBO2273 (85.5 38d) and CBO2267 (93.7 0d). | 0.440 |
CBO1594 | CBO0408 | Hypothetical protein; No significant database matches; Highly similar to CBO0900 (85.5 38d), CBO2273 (85.5 38d) and CBO2267 (93.7 0d). | Similar to Clostridium tetani conserved protein ctc02189 SWALL:Q892B6 (EMBL:AE015943) (314 aa) fasta scores: E(): 1.3e-78, 69.8 38d in 308 aa. | 0.499 |
CBO1594 | CBO1012 | Hypothetical protein; No significant database matches; Highly similar to CBO0900 (85.5 38d), CBO2273 (85.5 38d) and CBO2267 (93.7 0d). | MarR-family transcriptional regulator. | 0.440 |
CBO1594 | CBO1595 | Hypothetical protein; No significant database matches; Highly similar to CBO0900 (85.5 38d), CBO2273 (85.5 38d) and CBO2267 (93.7 0d). | Putative helicase. | 0.438 |
CBO1594 | CBO3364 | Hypothetical protein; No significant database matches; Highly similar to CBO0900 (85.5 38d), CBO2273 (85.5 38d) and CBO2267 (93.7 0d). | Conserved hypothetical protein. | 0.609 |
CBO1594 | CBO3396 | Hypothetical protein; No significant database matches; Highly similar to CBO0900 (85.5 38d), CBO2273 (85.5 38d) and CBO2267 (93.7 0d). | Putative CopG-family transcriptional regulator. | 0.487 |
CBO1595 | CBO1594 | Putative helicase. | Hypothetical protein; No significant database matches; Highly similar to CBO0900 (85.5 38d), CBO2273 (85.5 38d) and CBO2267 (93.7 0d). | 0.438 |
CBO3364 | CBO0408 | Conserved hypothetical protein. | Similar to Clostridium tetani conserved protein ctc02189 SWALL:Q892B6 (EMBL:AE015943) (314 aa) fasta scores: E(): 1.3e-78, 69.8 38d in 308 aa. | 0.419 |
CBO3364 | CBO1594 | Conserved hypothetical protein. | Hypothetical protein; No significant database matches; Highly similar to CBO0900 (85.5 38d), CBO2273 (85.5 38d) and CBO2267 (93.7 0d). | 0.609 |
CBO3396 | CBO1594 | Putative CopG-family transcriptional regulator. | Hypothetical protein; No significant database matches; Highly similar to CBO0900 (85.5 38d), CBO2273 (85.5 38d) and CBO2267 (93.7 0d). | 0.487 |