Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CBO1598AraC-family transcriptional regulator. (329 aa)    
Predicted Functional Partners:
CBO0685
AraC-family transcriptional regulator.
  
     0.764
CBO1600
Putative ABC transporter, ATP-binding/permease protein.
 
    0.711
CBO1599
Putative ABC transporter, ATP-binding/permease protein.
 
    0.699
CBO0564
AraC-family transcriptional regulator.
 
   0.650
CBO3575
AraC-family transcriptional regulator.
  
     0.625
CBO0703
AraC-family transcriptional regulator.
  
     0.624
CBO2078
Putative transmembrane protein.
 
     0.594
CBO2079
Putative transmembrane protein.
 
    0.589
CBO2164
AraC family regulatory protein; N-terminal region is similar to Escherichia coli,Escherichia coli O6, and Escherichia coli O157:H7 regulatory protein SoxS or b4062 or c5053 or z5661 or ecs5044 SWALL:SOXS_ECOLI (SWALL:P22539) (106 aa) fasta scores: E(): 7.2e-08, 32.07 38d in 106 aa. Full length CDS is similar to Clostridium tetani transcriptional regulatory protein ctc01432 SWALL:Q894V2 (EMBL:AE015941) (295 aa) fasta scores: E(): 1.9e-78, 64.4 38d in 295 aa.
  
     0.537
CBO2077
Conserved hypothetical protein (partial); This CDS is similar to internal region of the listed database matches; was marked partial.
 
     0.535
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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