Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CBO1626Putative membrane protein. (484 aa)    
Predicted Functional Partners:
CBO1625
RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
 
     0.942
CBO2054
Probable glycosyl transferase.
  
     0.742
CBO2050
Putative recombinase (partial); Pfam match to entry PF00239 resolvase, Resolvase, N terminal domain, score 41.5, E-value 2e-09.
  
     0.735
CBO0043
Similar to Clostridium tetani RNA polymerase sigma factor ctc01788 SWALL:Q893M7 (EMBL:AE015942) (212 aa) fasta scores: E(): 2.1e-44, 65.95 38d in 188 aa, and to Clostridium acetobutylicum predicted sigma factor cac1766 SWALL:Q97I86 (EMBL:AE007685) (185 aa) fasta scores: E(): 2.2e-20, 37.64 38d in 178 aa; Belongs to the sigma-70 factor family. ECF subfamily.
 
     0.734
CBO0674
RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
 
     0.718
CBO3437
Putative lipoprotein; No significant database matches.
  
 
 0.540
rpoC
DNA-directed RNA polymerase beta' chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.510
rpoB
DNA-directed RNA polymerase beta chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.510
CBO2131
Conserved hypothetical protein.
  
    0.502
rpoA
DNA-directed RNA polymerase alpha chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.491
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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