Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBO1652Putative phage envelope protein (partial); PS00013 Prokaryotic membrane lipoprotein lipid attachment site. (53 aa)    
Predicted Functional Partners:
CBO0117
Putative peptidoglycan binding protein; Similar to Clostridium tetani conserved protein ctc00280 SWALL:Q899A5 (EMBL:AE015936) (520 aa) fasta scores: E(): 8e-105, 53.07 38d in 520 aa, and to Clostridium acetobutylicum lysm domain containing membrane protein cac2903 SWALL:Q97F50 (EMBL:AE007787) (520 aa) fasta scores: E(): 1.9e-86, 45.76 38d in 520 aa.
  
   0.829
CBO1738
Putative phage protein.
  
   0.829
CBO2337
Hypothetical phage protein.
  
   0.829
CBO1742
Putative phage tail protein.
   
 
 0.770
CBO2333
Hypothetical phage protein.
   
 
 0.770
CBO1733
Putative phage protein.
   
 
 0.768
CBO2342
Hypothetical phage protein.
   
 
 0.768
CBO1741
Putative phage protein.
   
   0.749
CBO2334
Hypothetical phage protein.
   
   0.749
CBO1056
Putative glycosyltransferase (gene fragment); Pfam match to entry PF00534 Glycos_transf_1,Glycosyl transferases group 1, score 42.2, E-value 2.3e-11.
    
 
 0.528
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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