Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBO1675Oligopeptide-binding protein. (531 aa)    
Predicted Functional Partners:
CBO1676
Oligopeptide transport system permease protein.
 
 
 0.986
CBO1677
Oligopeptide transport system, permease protein.
 
 
 0.984
CBO1678
Oligopeptide transport system, ATP-binding protein.
 
 
 0.956
CBO1356
ABC transporter, permease protein.
 
 
 0.888
appB
Putative oligopeptide ABC transporter, permease protein.
 
 
 0.879
CBO1357
ABC transporter, permease protein.
 
 
 0.878
appC
Putative oligopeptide ABC transporter, permease protein.
 
 0.876
oppB
Oligopeptide ABC transporter, permease protein.
 
 
 0.857
oppC
Oligopeptide transport system permease protein.
 
 
 0.849
nikE
Putative oligopeptide ABC transporter,ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 
 0.846
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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