Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
CBO1676Oligopeptide transport system permease protein. (324 aa)    
Predicted Functional Partners:
CBO1677
Oligopeptide transport system, permease protein.
 
 0.993
CBO1675
Oligopeptide-binding protein.
 
 
 0.986
CBO1678
Oligopeptide transport system, ATP-binding protein.
 
 
 0.984
oppC
Oligopeptide transport system permease protein.
 
 0.948
appC
Putative oligopeptide ABC transporter, permease protein.
 
 0.947
CBO1357
ABC transporter, permease protein.
 
 0.947
nikE
Putative oligopeptide ABC transporter,ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 
 0.935
CBO1359
ABC transporter, ATP-binding protein.
 
 
 0.927
CBO1358
ABC transporter, ATP-binding protein.
 
 
 0.923
oppD
Oligopeptide ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 
 0.923
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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