Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
Experiments
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[Homology]
Score
CBO1679Phage integrase. (349 aa)    
Predicted Functional Partners:
CBO1684
Phage protein.
 
    0.832
CBO1679A
Phage regulatory protein.
     
 0.782
CBO2394
Putative resolvase.
  
  
 0.597
CBO0171
Putative phosphoribosyl transferase; Similar to Haemophilus influenzae competence protein F ComF or hi0434 SWALL:COMF_HAEIN (SWALL:P31773) (229 aa) fasta scores: E(): 4.7e-05, 25.83 38d in 209 aa,and to Clostridium acetobutylicum predicted amidophosphoribosyltransferase, ComC b.suntilis ortholog cac2852 SWALL:Q97F89 (EMBL:AE007783) (226 aa) fasta scores: E(): 6.3e-31, 46.63 38d in 208 aa.
   
    0.524
whiA
Conserved hypothetical protein; Involved in cell division and chromosome segregation.
   
    0.493
CBO1680
Phage transcriptional regulator.
  
    0.470
CBO1681
Putative phage-related protein; Similar to the C-terminal region of Frog adenovirus 1 33k protein SWALL:Q9IIH1 (EMBL:AF224336) (129 aa) fasta scores: E(): 6.5, 42.85 38d in 28 aa.
       0.461
CBO2360
Hypothetical phage protein; No significant database matches. Doubtful CDS.
      
 0.438
CBO2392
Hypothetical phage protein; Doubtful CDS. No significant database matches.
      
 0.438
CBO1683
Antirepressor.
 
     0.407
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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