CBO1683 protein (Clostridium botulinum A ATCC 3502)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

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empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

Assay-based Predictions

experimentally determined

co-expression

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gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

CBO1683

Antirepressor. (232 aa)

Predicted Functional Partners:

CBO1682

0.773

CBO1684

0.773

CBO1685

0.746

CBO1686

0.513

CBO1710

0.508

CBO1693

0.488

CBO1711

0.445

CBO1727

0.427

CBO2356

0.427

CBO1728

0.411

Your Current Organism:

Clostridium botulinum A ATCC 3502

NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
CBO1682	CBO1683	Similar to N-terminal region of Bacteriophage 434 repressor protein CI cI SWALL:RPC1_BP434 (SWALL:P16117) (94 aa) fasta scores: E(): 1.2, 30.35 38d in 56 aa, and to Listeria monocytogenes LcmR protein lcmR SWALL:Q9EUV6 (EMBL:AJ302030) (68 aa) fasta scores: E(): 1.5, 33.33 38d in 54 aa.	Antirepressor.	0.773
CBO1682	CBO1684	Similar to N-terminal region of Bacteriophage 434 repressor protein CI cI SWALL:RPC1_BP434 (SWALL:P16117) (94 aa) fasta scores: E(): 1.2, 30.35 38d in 56 aa, and to Listeria monocytogenes LcmR protein lcmR SWALL:Q9EUV6 (EMBL:AJ302030) (68 aa) fasta scores: E(): 1.5, 33.33 38d in 54 aa.	Phage protein.	0.775
CBO1682	CBO1685	Similar to N-terminal region of Bacteriophage 434 repressor protein CI cI SWALL:RPC1_BP434 (SWALL:P16117) (94 aa) fasta scores: E(): 1.2, 30.35 38d in 56 aa, and to Listeria monocytogenes LcmR protein lcmR SWALL:Q9EUV6 (EMBL:AJ302030) (68 aa) fasta scores: E(): 1.5, 33.33 38d in 54 aa.	Putative phage protein; No significant database matches.	0.746
CBO1682	CBO1686	Similar to N-terminal region of Bacteriophage 434 repressor protein CI cI SWALL:RPC1_BP434 (SWALL:P16117) (94 aa) fasta scores: E(): 1.2, 30.35 38d in 56 aa, and to Listeria monocytogenes LcmR protein lcmR SWALL:Q9EUV6 (EMBL:AJ302030) (68 aa) fasta scores: E(): 1.5, 33.33 38d in 54 aa.	Putative phage protein; No significant database matches.	0.513
CBO1683	CBO1682	Antirepressor.	Similar to N-terminal region of Bacteriophage 434 repressor protein CI cI SWALL:RPC1_BP434 (SWALL:P16117) (94 aa) fasta scores: E(): 1.2, 30.35 38d in 56 aa, and to Listeria monocytogenes LcmR protein lcmR SWALL:Q9EUV6 (EMBL:AJ302030) (68 aa) fasta scores: E(): 1.5, 33.33 38d in 54 aa.	0.773
CBO1683	CBO1684	Antirepressor.	Phage protein.	0.773
CBO1683	CBO1685	Antirepressor.	Putative phage protein; No significant database matches.	0.746
CBO1683	CBO1686	Antirepressor.	Putative phage protein; No significant database matches.	0.513
CBO1683	CBO1693	Antirepressor.	Phage protein.	0.488
CBO1683	CBO1710	Antirepressor.	Phage protein.	0.508
CBO1683	CBO1711	Antirepressor.	Phage protein.	0.445
CBO1683	CBO1727	Antirepressor.	Scaffold protein.	0.427
CBO1683	CBO1728	Antirepressor.	Coat protein.	0.411
CBO1683	CBO2356	Antirepressor.	Phage terminase small subunit.	0.427
CBO1684	CBO1682	Phage protein.	Similar to N-terminal region of Bacteriophage 434 repressor protein CI cI SWALL:RPC1_BP434 (SWALL:P16117) (94 aa) fasta scores: E(): 1.2, 30.35 38d in 56 aa, and to Listeria monocytogenes LcmR protein lcmR SWALL:Q9EUV6 (EMBL:AJ302030) (68 aa) fasta scores: E(): 1.5, 33.33 38d in 54 aa.	0.775
CBO1684	CBO1683	Phage protein.	Antirepressor.	0.773
CBO1684	CBO1685	Phage protein.	Putative phage protein; No significant database matches.	0.746
CBO1684	CBO1686	Phage protein.	Putative phage protein; No significant database matches.	0.513
CBO1684	CBO1693	Phage protein.	Phage protein.	0.428
CBO1685	CBO1682	Putative phage protein; No significant database matches.	Similar to N-terminal region of Bacteriophage 434 repressor protein CI cI SWALL:RPC1_BP434 (SWALL:P16117) (94 aa) fasta scores: E(): 1.2, 30.35 38d in 56 aa, and to Listeria monocytogenes LcmR protein lcmR SWALL:Q9EUV6 (EMBL:AJ302030) (68 aa) fasta scores: E(): 1.5, 33.33 38d in 54 aa.	0.746