Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBO1728Coat protein. (321 aa)    
Predicted Functional Partners:
CBO1730
Putative phage protein.
 
     0.940
CBO1731
Putative phage protein.
 
     0.938
CBO1727
Scaffold protein.
 
     0.931
CBO1723
Portal protein.
 
  
 0.917
CBO1732
Putative phage protein.
 
     0.860
CBO1729
Phage protein.
       0.790
CBO1724
Putative prophage head protein.
 
     0.781
CBO1722
Terminase large subunit.
 
  
 0.763
CBO1721
Terminase small subunit.
 
    0.759
CBO1734
Putative phage protein.
 
     0.743
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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