Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
CBO1812RpiR-family transcriptional regulator. (294 aa)    
Predicted Functional Partners:
yabG
Probable peptidase; Similar to Clostridium tetani conserved protein ctc00279 SWALL:Q899A6 (EMBL:AE015936) (300 aa) fasta scores: E(): 3.5e-69, 65.21 38d in 299 aa, and to Clostridium acetobutylicum uncharacterized protein, yabg b.subtilis ortholog cac2905 SWALL:Q97F48 (EMBL:AE007788) (300 aa) fasta scores: E(): 8.1e-69, 61.79 38d in 301 aa.
      
 0.709
maf
Septum formation protein; Nucleoside triphosphate pyrophosphatase that hydrolyzes dTTP and UTP. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids.
   
    0.652
mreC
Rod shape-determining protein; Involved in formation and maintenance of cell shape.
   
    0.595
gluD
NAD-specific glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
       0.568
CBO1342
Putative phosphosugar-binding transcriptional regulator.
  
     0.554
CBO3607
Putative DNA replication protein.
  
     0.545
rluB
Ribosomal large subunit pseudouridine synthase B; Belongs to the pseudouridine synthase RsuA family.
       0.538
CBO0188
Putative membrane protein; Similar to Staphylococcus epidermidis cell shape determinant MreD se1331 SWALL:Q8CNZ6 (EMBL:AE016748) (173 aa) fasta scores: E(): 0.34, 22.36 38d in 161 aa, and to Clostridium tetani heptaprenyl diphosphate synthase component I ctc01025 SWALL:Q896H9 (EMBL:AE015939) (181 aa) fasta scores: E(): 0.13, 25.97 38d in 154 aa.
  
     0.520
CBO0189
DnaJ-related protein; Similar to Clostridium acetobutylicum molecular chaperone, DNAJ family cac0648 SWALL:Q97LB4 (EMBL:AE007580) (195 aa) fasta scores: E(): 1.6e-36,55.15 38d in 194 aa.
  
     0.508
CBO0190
Conserved hypothetical protein; Similar to Clostridium acetobutylicum uncharacterized protein, homolog of thermotoga maritima cac0649 SWALL:Q97LB3 (EMBL:AE007580) (283 aa) fasta scores: E(): 6.7e-52, 52.51 38d in 278 aa, and to Thermotoga maritima hypothetical protein Tm1805 tm1805 SWALL:Q9X2C5 (EMBL:AE001818) (272 aa) fasta scores: E(): 1.4e-10, 35.03 38d in 294 aa.
  
     0.498
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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