Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBO1905Putative exported protein. (137 aa)    
Predicted Functional Partners:
CBO1902
Conserved hypothetical protein.
  
    0.837
CBO1906
Putative exported protein.
  
  
 0.830
CBO1904
Conserved hypothetical protein.
       0.828
CBO1909
General secretion pathway protein.
  
 
 0.792
CBO1908
General secretion pathway protein.
  
  
 0.786
CBO1903
Hypothetical protein; No significant database matches.
       0.759
CBO1901
Putative membrane protein.
       0.721
CBO1900
Putative exported protein; No significant database matches.
       0.704
CBO0170
Similar to Clostridium tetani conserved protein ctc00323 SWALL:Q898W5 (EMBL:AE015937) (354 aa) fasta scores: E(): 9.6e-44, 38.26 38d in 345 aa.
   
  
 0.618
spoVB-2
Putative sporulation protein; Also similar to CBO1434 and CBO3536.
   
    0.603
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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