STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBO1908General secretion pathway protein. (396 aa)    
Predicted Functional Partners:
CBO1909
General secretion pathway protein.
 
 
 0.998
CBO1316
Putative type IV prepilin signal peptidase.
 
  
 0.948
CBO1907
Putative pilin.
 
  
 0.946
CBO2539
Putative twitching mobility protein.
 
  
 0.896
CBO1904
Conserved hypothetical protein.
  
  
 0.833
CBO1905
Putative exported protein.
  
  
 0.833
CBO2978
Putative competence protein.
  
  
 0.783
CBO0170
Similar to Clostridium tetani conserved protein ctc00323 SWALL:Q898W5 (EMBL:AE015937) (354 aa) fasta scores: E(): 9.6e-44, 38.26 38d in 345 aa.
   
  
 0.685
CBO1001
Putative membrane protein (competence protein).
  
  
 0.655
ssb
Single-strand binding protein; Similar to Clostridium acetobutylicum single-strand binding protein 1 Ssb1 or cac0945 SWALL:Q97KH4 (EMBL:AE007610) (110 aa) fasta scores: E(): 2.3e-17,47.66 38d in 107 aa.
  
    0.600
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.