aorA protein (Clostridium botulinum A ATCC 3502)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

aorA

Tungsten-containing aldehyde ferredoxin oxidoreductase. (605 aa)

Predicted Functional Partners:

hymB

0.902

moeA2

0.886

moaD

0.880

CBO1332

0.867

tupA

0.855

moeB

0.841

agaY

0.800

tupB

0.776

moeA1

0.743

CBO0545

0.702

Your Current Organism:

Clostridium botulinum A ATCC 3502

NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CBO0545	CBO1332	CBO0545	CBO1332	Putative [2Fe-2S] binding protein.	Putative oxidoreductase, electron transfer subunit.	0.693
CBO0545	aorA	CBO0545	CBO1935	Putative [2Fe-2S] binding protein.	Tungsten-containing aldehyde ferredoxin oxidoreductase.	0.702
CBO0545	hymB	CBO0545	CBO1848	Putative [2Fe-2S] binding protein.	Putative electron-transferring subunit of iron-only hydrogenase.	0.529
CBO1332	CBO0545	CBO1332	CBO0545	Putative oxidoreductase, electron transfer subunit.	Putative [2Fe-2S] binding protein.	0.693
CBO1332	aorA	CBO1332	CBO1935	Putative oxidoreductase, electron transfer subunit.	Tungsten-containing aldehyde ferredoxin oxidoreductase.	0.867
CBO1332	hymB	CBO1332	CBO1848	Putative oxidoreductase, electron transfer subunit.	Putative electron-transferring subunit of iron-only hydrogenase.	0.652
agaY	aorA	CBO1993	CBO1935	Tagatose-1,6-bisphosphate aldolase.	Tungsten-containing aldehyde ferredoxin oxidoreductase.	0.800
aorA	CBO0545	CBO1935	CBO0545	Tungsten-containing aldehyde ferredoxin oxidoreductase.	Putative [2Fe-2S] binding protein.	0.702
aorA	CBO1332	CBO1935	CBO1332	Tungsten-containing aldehyde ferredoxin oxidoreductase.	Putative oxidoreductase, electron transfer subunit.	0.867
aorA	agaY	CBO1935	CBO1993	Tungsten-containing aldehyde ferredoxin oxidoreductase.	Tagatose-1,6-bisphosphate aldolase.	0.800
aorA	hymB	CBO1935	CBO1848	Tungsten-containing aldehyde ferredoxin oxidoreductase.	Putative electron-transferring subunit of iron-only hydrogenase.	0.902
aorA	moaD	CBO1935	CBO1934	Tungsten-containing aldehyde ferredoxin oxidoreductase.	Putative molybdopterin converting factor,subunit 1.	0.880
aorA	moeA1	CBO1935	CBO1942	Tungsten-containing aldehyde ferredoxin oxidoreductase.	Molybdopterin biosynthesis protein; Catalyzes the insertion of molybdate into adenylated molybdopterin with the concomitant release of AMP. Belongs to the MoeA family.	0.743
aorA	moeA2	CBO1935	CBO1941	Tungsten-containing aldehyde ferredoxin oxidoreductase.	Molybdopterin biosynthesis protein; Catalyzes the insertion of molybdate into adenylated molybdopterin with the concomitant release of AMP. Belongs to the MoeA family.	0.886
aorA	moeB	CBO1935	CBO1933	Tungsten-containing aldehyde ferredoxin oxidoreductase.	Molybdopterin biosynthesis protein.	0.841
aorA	tupA	CBO1935	CBO1946	Tungsten-containing aldehyde ferredoxin oxidoreductase.	Extracellular tungstate binding protein.	0.855
aorA	tupB	CBO1935	CBO1945	Tungsten-containing aldehyde ferredoxin oxidoreductase.	Permease component of tungstate ABC transporter.	0.776
hymB	CBO0545	CBO1848	CBO0545	Putative electron-transferring subunit of iron-only hydrogenase.	Putative [2Fe-2S] binding protein.	0.529
hymB	CBO1332	CBO1848	CBO1332	Putative electron-transferring subunit of iron-only hydrogenase.	Putative oxidoreductase, electron transfer subunit.	0.652
hymB	aorA	CBO1848	CBO1935	Putative electron-transferring subunit of iron-only hydrogenase.	Tungsten-containing aldehyde ferredoxin oxidoreductase.	0.902