STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBO1972Putative membrane protein. (188 aa)    
Predicted Functional Partners:
ccmA-4
Putative cobalt ABC transporter, ATP-binding protein.
 
  
 0.962
CBO1970
Putative cobalt ABC transporter, permease protein.
 
  
 0.942
CBO2077
Conserved hypothetical protein (partial); This CDS is similar to internal region of the listed database matches; was marked partial.
 
  
 0.634
CBO1969
Conserved hypothetical protein.
       0.585
CBO2078
Putative transmembrane protein.
  
  
 0.484
ecfT
ABC transporter, permease protein; Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
  
  
 0.484
thiC
Thiamine biosynthesis protein; Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction. Belongs to the ThiC family.
   
  
 0.481
CBO1973
Putative alanine racemase.
       0.469
cbiQ
Putative cobalt transport protein.
  
  
 0.438
thiD1
Phosphomethylpyrimidine kinase; This CDS is also similar to CBO0771 (52.308 identity in 260 aa overlap).
  
    0.424
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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