STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
gerAB2Spore germination protein; This CDS is also similar to CBO1974 (65.374 38d. in 361 aa overlap), CBO1978 (50.413 38d. in 363 aa overlap),CBO2796 (36.957 38d. in 368 aa overlap) and to CBO2300 (32.682 38d. in 358 aa overlap). (363 aa)    
Predicted Functional Partners:
gerAC
Spore germination protein.
 
  
 0.951
gerAA
Spore germination protein.
 
  
 0.939
CBO0125
Similar to Bacillus cereus spore germination protein GerlC SWALL:Q93N68 (EMBL:AF387344) (390 aa) fasta scores: E(): 1.8e-14, 27.36 38d in 402 aa, and to Clostridium tetani spore germination protein A3 ctc00287 SWALL:Q898Z9 (EMBL:AE015936) (394 aa) fasta scores: E(): 1.6e-56, 37.72 38d in 395 aa.
 
  
 0.810
gerAC-2
Spore germination protein.
 
  
 0.783
spoIIM
Putative stage II sporulation protein.
  
   
 0.752
gerAA-2
Spore germination protein.
 
  
 0.749
CBO0123
Similar to Bacillus cereus spore germination protein GerlA SWALL:Q93N70 (EMBL:AF387344) (492 aa) fasta scores: E(): 7.4e-71, 40.43 38d in 502 aa, and to Clostridium tetani spore germination protein b1 ctc00285 SWALL:Q899A1 (EMBL:AE015936) (492 aa) fasta scores: E(): 3.1e-111, 64.34 38d in 502 aa.
 
  
 0.746
spoIIIAB
Stage III sporulation protein AB.
  
     0.708
ypeB
Sporulation protein; Similar to Bacillus subtilis sporulation protein YpeB or JoeB or bsu22920 SWALL:YPEB_BACSU (SWALL:P38490) (450 aa) fasta scores: E(): 1e-27, 26.57 38d in 444 aa,and to Clostridium tetani conserved membrane-associated protein ctc00290 SWALL:Q898Z6 (EMBL:AE015936) (455 aa) fasta scores: E(): 2.7e-92, 57.54 38d in 457 aa.
 
     0.704
CBO0482
Similar to Bacillus halodurans hypothetical protein Bh1562 SWALL:Q9KCK9 (EMBL:AP001512) (268 aa) fasta scores: E(): 4.7e-46, 45.14 38d in 268 aa.
  
     0.674
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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