STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
treRTrehalose operon transcriptional repressor. (236 aa)    
Predicted Functional Partners:
treB
PTS system, trehalose-specific IIbc component.
 
  
 0.955
treA
Trehalose-6-phosphate hydrolase.
 
  
 0.952
CBO0655
PTS system, beta-glucoside-specific IIabc component.
 
  
 0.637
CBO1240
Putative transcriptional regulator.
 
  
 0.637
bglF
PTS system, beta-glucoside-specific IIabc component.
 
  
 0.598
nagA
N-acetylglucosamine-6-phosphate deacetylase.
  
  
 0.575
CBO0564
AraC-family transcriptional regulator.
  
  
 0.573
CBO1198
AraC-family transcriptional regulator.
  
  
 0.573
CBO2781
AraC-family transcriptional regulator.
  
  
 0.573
CBO1344
PTS system, IIbc component.
 
  
 0.564
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.