STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pfkBProbable sugar kinase; This CDS is also similar to CBO1763 (35.644 identity in 303 aa overlap); Belongs to the carbohydrate kinase PfkB family. LacC subfamily. (307 aa)    
Predicted Functional Partners:
CBO1991
PTS system, IIbc component.
 
  
 0.998
fruA
PTS system, IIa component.
 
  
 0.915
agaY
Tagatose-1,6-bisphosphate aldolase.
  
  
 0.824
CBO1271
DeoR-family transcriptional regulator.
 
  
 0.802
CBO2210
DeoR family regulatory proteins.
 
  
 0.795
glcR
DeoR-family transcriptional regulator.
 
  
 0.785
licA
PTS system, lichenan-specific IIa component.
  
  
 0.712
pykF
Pyruvate kinase; Belongs to the pyruvate kinase family.
 
  
 0.711
CBO0759
Conserved hypothetical protein (pseudogene); Pseudogene. This CDS contains an in-frame TGA stop codon. Similar to Halobacterium sp. orf h1434 vng5177C SWALL:O52025 (EMBL:AF016485) (391 aa) fasta scores: E(): 3.1e-38, 44.44 38d in 279 aa.
     
 0.652
CBO0612
Putative membrane protein.
  
  
 0.641
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.