STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBO1995Conserved hypothetical protein. (124 aa)    
Predicted Functional Partners:
CBO0443
Similar to Methanosarcina mazei conserved protein mm1395 SWALL:Q8PX27 (EMBL:AE013374) (154 aa) fasta scores: E(): 8e-25, 48.36 38d in 153 aa.
 
     0.660
CBO0544
Putative acetyltransferase.
  
     0.626
CBO0663
Conserved hypothetical protein.
  
     0.612
CBO2245
MerR family regulatory protein.
 
     0.547
CBO0708
MerR-family transcriptional regulator.
 
     0.510
CBO1994
Phosphosugar-binding transcriptional regulator.
       0.508
rho
Transcription termination factor Rho; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template.
   
    0.501
CBO0873
Conserved hypothetical protein.
  
     0.496
CBO0710
Putative drug resistance ABC-transporter,membrane protein.
  
     0.478
CBO0664
Conserved hypothetical protein.
  
     0.473
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.