STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBO1996Putative endoribonuclease. (131 aa)    
Predicted Functional Partners:
CBO0856
Putative acetyltransferase.
  
    0.674
CBO2256
Metallo-beta-lactamase superfamily protein.
 
    0.516
CBO2013
Putative membrane protein.
 
     0.512
CBO0750
Putative transposase (partial); Partial CDS. Similar to internal regions of several transposases including Thiobacillus ferrooxidans resolvase-like protein SWALL:O33828 (EMBL:U73041) (859 aa) fasta scores: E(): 4.3e-18, 42.74 38d in 124 aa, and to Streptomyces fradiae transposase for transposon tn4556 tnpA SWALL:TNPA_STRFR (SWALL:P20189) (892 aa) fasta scores: E(): 6.4, 26.44 38d in 121 aa; was marked partial.
  
    0.501
CBO2296
Putative membrane protein.
  
     0.498
CBO2164
AraC family regulatory protein; N-terminal region is similar to Escherichia coli,Escherichia coli O6, and Escherichia coli O157:H7 regulatory protein SoxS or b4062 or c5053 or z5661 or ecs5044 SWALL:SOXS_ECOLI (SWALL:P22539) (106 aa) fasta scores: E(): 7.2e-08, 32.07 38d in 106 aa. Full length CDS is similar to Clostridium tetani transcriptional regulatory protein ctc01432 SWALL:Q894V2 (EMBL:AE015941) (295 aa) fasta scores: E(): 1.9e-78, 64.4 38d in 295 aa.
  
     0.497
CBO1781
Putative exported protein; No significant database matches.
  
     0.469
CBO0513
GntR-family transcriptional regulator.
  
     0.450
CBO0602
AraC-family transcriptional regulator.
  
     0.449
busR
Putative transcriptional repressor (GntR-family) of the glycine betaine uptake system.
  
     0.438
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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