STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBO2004Putative oxidoreductase. (354 aa)    
Predicted Functional Partners:
kdgK
Similar to Escherichia coli 2-dehydro-3-deoxygluconokinase KdgK or b3526 SWALL:KDGK_ECOLI (SWALL:P37647) (309 aa) fasta scores: E(): 2e-08, 26.46 38d in 291 aa.
 
  
 0.806
CBO2144
Putative endonuclease.
 
  
 0.721
CBO3367
Conserved hypothetical protein.
  
 
 0.676
CBO3233
Putative endonuclease.
  
  
 0.670
rmlB
Putative dTDP-glucose 4,6-dehydratase.
  
  
 0.646
lysS
lysyl-tRNA synthetase; Belongs to the class-II aminoacyl-tRNA synthetase family.
  
    0.631
aldH
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
  
 0.617
gapN
NADP-dependent glyceraldehyde-3-phosphate dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
  
 0.617
CBO0833
Putative spore coat polysacharide biosynthesis protein; Belongs to the DegT/DnrJ/EryC1 family.
  
  
 0.597
degT
Putative pleiotropic regulatory protein; Belongs to the DegT/DnrJ/EryC1 family.
  
  
 0.597
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.