STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBO2011Putative exported protein. (265 aa)    
Predicted Functional Partners:
CBO0427
Hypothetical protein; No significant database matches.
  
    0.591
CBO0391
Similar to Clostridium tetani conserved protein ctc00525 SWALL:Q898D7 (EMBL:AE015937) (279 aa) fasta scores: E(): 5.4e-39, 47.6 38d in 250 aa.
   
   0.533
CBO0455
Similar to Bifidobacterium longum permease of ABC transporter for branched-chain amino acids bl1716 SWALL:Q8G3P1 (EMBL:AE014805) (358 aa) fasta scores: E(): 1.7e-36, 41.1 38d in 309 aa; Belongs to the binding-protein-dependent transport system permease family.
   
   0.533
CBO2010
Similar to N-terminal region of several ATP-dependent RNA helicases; Belongs to the DEAD box helicase family.
       0.400
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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