STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBO2016Probable amino acid ABC transporter, ATP-binding protein. (240 aa)    
Predicted Functional Partners:
CBO2017
Probable amino acid ABC transporter, permease protein.
 0.998
CBO2018
Probable amino acid abc transporter,substrate-binding protein.
 
 0.987
CBO1180
Putative cystine ABC transporter, permease protein.
 
 0.916
CBO1412
Putative ABC transporter, permease protein.
 
 0.915
CBO0445
Binding-protein-dependent transport system,membrane component; Similar to Listeria innocua hypothetical protein Lin1851 lin1851 SWALL:Q92AR8 (EMBL:AL596170) (213 aa) fasta scores: E(): 2.2e-40, 51.65 38d in 211 aa.
 
 0.913
CBO1401
Putative ABC transporter, membrane protein.
 
 0.907
CBO1150
ABC transporter, permease protein.
 
 0.905
CBO1411
Putative ABC transporter, substrate-binding lipoprotein; Belongs to the bacterial solute-binding protein 3 family.
 
 
 0.859
CBO1181
Putative cystine ABC transporter,substrate-binding protein.
 
 
 0.851
CBO0446
Binding-protein-dependent transport system,permease component; Similar to Escherichia coli, and Escherichia coli O6 cystine-binding periplasmic protein precursor FliY or b1920 or c2335 SWALL:FLIY_ECOLI (SWALL:P39174) (266 aa) fasta scores: E(): 5.9e-25, 33.84 38d in 260 aa; Belongs to the bacterial solute-binding protein 3 family.
 
 
 0.850
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.