STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBO2018Probable amino acid abc transporter,substrate-binding protein. (272 aa)    
Predicted Functional Partners:
CBO2017
Probable amino acid ABC transporter, permease protein.
 0.999
CBO2016
Probable amino acid ABC transporter, ATP-binding protein.
 
 0.986
CBO0445
Binding-protein-dependent transport system,membrane component; Similar to Listeria innocua hypothetical protein Lin1851 lin1851 SWALL:Q92AR8 (EMBL:AL596170) (213 aa) fasta scores: E(): 2.2e-40, 51.65 38d in 211 aa.
 
 0.983
CBO1412
Putative ABC transporter, permease protein.
 
 0.983
CBO1150
ABC transporter, permease protein.
 
 0.982
CBO1401
Putative ABC transporter, membrane protein.
 
 0.982
CBO1180
Putative cystine ABC transporter, permease protein.
 
 0.981
CBO0420
Probable amino acid ABC transporter, ATP binding protein; Similar to Bacillus subtilis glutamine ABC transporter GlnQ SWALL:O34677 (EMBL:Z99117) (242 aa) fasta scores: E(): 4.9e-46, 56.84 38d in 241 aa, and to Corynebacterium glutamicum glutamate transport ATP-binding protein GluA or cgl1950 SWALL:GLUA_CORGL (SWALL:P48243) (242 aa) fasta scores: E(): 2.1e-43, 56.01 38d in 241 aa.
 
 
 0.850
CBO1402
Putative ABC transporter, ATP-binding protein.
 
 
 0.838
CBO1149
ABC transporter, ATP-binding protein.
 
 
 0.834
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.