STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBO2019Conserved hypothetical protein. (426 aa)    
Predicted Functional Partners:
glcD
Glycolate oxidase subunit.
 
  
  0.938
CBO1006
Conserved hypothetical protein.
  
  
 
0.921
CBO3057
Putative metallo-beta-lactamase superfamily protein.
     
 0.914
ldh
L-lactate dehydrogenase; Catalyzes the conversion of lactate to pyruvate.
     
 0.913
etfB
Electron transfer flavoprotein beta-subunit.
    
 0.906
etfB-2
Electron transfer flavoprotein alpha-subunit.
    
 0.905
CBO1814
Conserved hypothetical protein.
  
  
 
0.905
ldhA1
Putative acetyltransferase (pseudogene); Pfam match to entry PF00583 Acetyltransf,Acetyltransferase (GNAT) family, score 28.4, E-value 4.9e-09; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
    
 0.905
CBO0105
Conserved hypothetical protein; Similar to Myxococcus xanthus phosphoribosyl amino imidizole carboxylase-like protein SWALL:Q8VQZ2 (EMBL:AF449411) (250 aa) fasta scores: E(): 2.7e-43,52.43 38d in 246 aa, and to Clostridium acetobutylicum ncair mutase cac0776 SWALL:Q97KZ0 (EMBL:AE007592) (248 aa) fasta scores: E(): 4.2e-63, 71.37 38d in 248 aa.
 
  
 0.823
CBO1183
Conserved hypothetical protein.
 
  
 0.762
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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