close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBO2020Putative aminotransferase. (379 aa)    
Predicted Functional Partners:
alaS
Putative alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
  
  
 0.615
purD
Phosphoribosylamine--glycine ligase; Belongs to the GARS family.
  
    0.601
serA
Putative D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
 
  
 0.591
fchA
Methenyltetrahydrofolate cyclohydrolase.
  
  
 0.533
nifJ2
Pyruvate-flavodoxin oxidoreductase; Also similar to CBO1192 (65.74 38d).
  
  
 0.530
catB
Chloramphenicol acetyltransferase.
       0.512
CBO0038
Conserved hypothetical protein; Similar to Clostridium acetobutylicum predicted enzyme with TIM-barrel fold cac0148 SWALL:Q97MP4 (EMBL:AE007526) (228 aa) fasta scores: E(): 1.9e-61,73.79 38d in 229 aa, and to Thermoanaerobacter tengcongensis hypothetical protein Tte2521 SWALL:Q8R798 (EMBL:AE013193) (227 aa) fasta scores: E(): 7.2e-52, 69.3 id in 215 aa.
  
 0.444
CBO3119
Putative FMN-dependent dehydrogenase.
  
 0.444
CBO1505
Putative oxidoreductase.
  
 
 0.437
metG
methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
 
      0.432
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.