Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBO2080Putative AraC-family transcriptional regulator. (320 aa)    
Predicted Functional Partners:
CBO2079
Putative transmembrane protein.
 
    0.880
CBO2078
Putative transmembrane protein.
 
     0.873
CBO2077
Conserved hypothetical protein (partial); This CDS is similar to internal region of the listed database matches; was marked partial.
 
     0.860
nifE1
Nitrogenase iron-molybdenum cofactor biosynthesis protein.
  
     0.636
CBO2279
ABC transporter, ATP-binding transmembrane protein.
 
    0.630
CBO1599
Putative ABC transporter, ATP-binding/permease protein.
 
    0.602
CBO2278
ABC transporter, ATP-binding transmembrane protein.
 
    0.590
CBO1600
Putative ABC transporter, ATP-binding/permease protein.
 
    0.583
fhuD2
Iron-uptake system binding protein.
 
    0.566
CBO1198
AraC-family transcriptional regulator.
 
   0.515
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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