STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBO2102Putative glycosyltransferase. (449 aa)    
Predicted Functional Partners:
CBO2103
Putative glycosyltransferase.
 
 
0.867
CBO2766A
Putative glucose translocase.
  
 
 0.804
CBO2055
Glucose-1-phosphate thymidylyltransferase.
 
  
 0.656
CBO2101
Putative tetracycline resistance protein; Similar to internal regions of database matches. Also highly similar to an internal region of CBO2104 (93.9 38d); was marked partial.
 
  
 0.654
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
  
  
 0.646
CBO2714
Putative CDP-4-dehydro-6-deoxy-D-gulose 4-reductase.
 
 
 0.603
CBO0351
Probable polysaccharide deacetylase; Similar to Clostridium acetobutylicum predicted xylanase/chitin deacetylase cac2396 SWALL:Q97GH1 (EMBL:AE007739) (280 aa) fasta scores: E(): 3.1e-34, 45.6 id in 250 aa.
 
  
 0.600
CBO0223
Similar to Bacillus subtilis probable polysaccharide deacetylase PdaA precursor PdaA or bsu07980 SWALL:PDAA_BACSU (SWALL:O34928) (263 aa) fasta scores: E(): 1.1e-13, 34.95 38d in 206 aa, and to Clostridium perfringens probable endo-1,4-beta-xylanase cpe1477 SWALL:Q8XKC3 (EMBL:AP003190) (238 aa) fasta scores: E(): 8.6e-33, 44.58 38d in 240 aa.
 
  
 0.595
CBO2801
Probable polysaccharide deacetylase.
 
  
 0.594
pdaB
Probable polysaccharide deacetylase.
 
  
 0.593
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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