STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBO2128Putative MarR-family transcriptional regulator. (315 aa)    
Predicted Functional Partners:
CBO3328
Putative phosphatase.
  
     0.714
CBO2401
Putative membrane protein.
  
     0.614
CBO2779
Putative membrane protein; No significant database matches.
  
     0.554
CBO0183
Putative pyridine nucleotide-disulphide oxidoreductase; Similar to Fusobacterium nucleatum coenzyme a disulfide reductase/ disulfide bond regulator domain fn1903 SWALL:Q8RHU1 (EMBL:AE010492) (810 aa) fasta scores: E(): 1e-163, 56.35 38d in 818 aa, and to Fusobacterium nucleatum subsp. vincentii ATCC 49256 coenzyme a disulfide reductase/ disulfide bond regulator domain fnv2089 SWALL:Q7P7P1 (EMBL:AABF01000012) (809 aa) fasta scores: E(): 2.7e-159, 55.5 38d in 818 aa; Belongs to the sulfur carrier protein TusA family.
  
  
 0.499
CBO2127
Putative transmembrane MATE family transporter protein.
  
    0.494
CBO2025
Hypothetical protein; No significant database matches.
  
    0.469
CBO2228
Putative cell wall-associated protein; No significant database matches to the full length CDS. N-terminus is similar to the N-terminal regions of Bacillus subtilis N-acetylmuramoyl-L-alanine amidase cwlB precursor LytC or CwlB or bsu35620 SWALL:CWLB_BACSU (SWALL:Q02114) (496 aa) fasta scores: E(): 4.4e-06, 33.92 id in 336 aa, and Clostridium tetani putative S-layer protein/internalin A-like/N-acetylmuramoyl-L-alanine amidase ctc00696 SWALL:Q897N6 (EMBL:AE015938) (518 aa) fasta scores: E(): 5.4e-60, 49.18 38d in 370 aa.
  
     0.404
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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