STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBO2133Putative sortase. (204 aa)    
Predicted Functional Partners:
CBO2134
Putative cell surface-anchored phosphoesterase; Codons 498 to 620 are similar to the N-terminus to codon 124 of Methanobacterium thermoautotrophicum conserved protein mth1478 SWALL:O27522 (EMBL:AE000908) (154 aa) fasta scores: E(): 0.0068, 26.82 38d in 123 aa.
       0.773
recO
DNA repair protein; Involved in DNA repair and RecF pathway recombination.
  
   
 0.630
groEL
60 kDa chaperonin GroEL; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions.
      
 0.584
CBO0068
Similar to Clostridium tetani putative polysaccharide deacetylase ctc00229 SWALL:Q899F2 (EMBL:AE015936) (293 aa) fasta scores: E(): 4.7e-50,52.05 38d in 292 aa, and to Clostridium acetobutylicum predicted xylanase/chitin deacetilase, similar to yxkh b.subtilis cac0436 SWALL:Q97LW8 (EMBL:AE007558) (295 aa) fasta scores: E(): 8.6e-38, 47.03 38d in 253 aa.
     
 0.521
CBO0223
Similar to Bacillus subtilis probable polysaccharide deacetylase PdaA precursor PdaA or bsu07980 SWALL:PDAA_BACSU (SWALL:O34928) (263 aa) fasta scores: E(): 1.1e-13, 34.95 38d in 206 aa, and to Clostridium perfringens probable endo-1,4-beta-xylanase cpe1477 SWALL:Q8XKC3 (EMBL:AP003190) (238 aa) fasta scores: E(): 8.6e-33, 44.58 38d in 240 aa.
     
 0.521
CBO0351
Probable polysaccharide deacetylase; Similar to Clostridium acetobutylicum predicted xylanase/chitin deacetylase cac2396 SWALL:Q97GH1 (EMBL:AE007739) (280 aa) fasta scores: E(): 3.1e-34, 45.6 id in 250 aa.
     
 0.521
CBO2775
Probable polysaccharide deacetylase.
     
 0.521
CBO2801
Probable polysaccharide deacetylase.
     
 0.521
pdaB
Probable polysaccharide deacetylase.
     
 0.521
birA
BirA bifunctional protein [includes: biotin operon repressor; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
      
 0.471
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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