STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CBO2134Putative cell surface-anchored phosphoesterase; Codons 498 to 620 are similar to the N-terminus to codon 124 of Methanobacterium thermoautotrophicum conserved protein mth1478 SWALL:O27522 (EMBL:AE000908) (154 aa) fasta scores: E(): 0.0068, 26.82 38d in 123 aa. (891 aa)    
Predicted Functional Partners:
CBO2133
Putative sortase.
       0.773
CBO2123
Conserved hypothetical protein.
  
     0.613
CBO2124
Putative membrane protein.
  
     0.543
eutT
Conserved hypothetical protein.
  
     0.460
CBO2112
Conserved hypothetical protein.
  
     0.447
CBO2132
Conserved hypothetical protein.
       0.416
CBO2131
Conserved hypothetical protein.
       0.405
CBO2135
Two-component sensor kinase.
       0.402
CBO2136
Two-component system response regulator.
       0.402
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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