STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBO2135Two-component sensor kinase. (339 aa)    
Predicted Functional Partners:
CBO2136
Two-component system response regulator.
 
 0.964
CBO2140
Putative ABC transporter, permease protein.
 
 
 
 0.928
CBO2146
ABC transporter, permease protein; CDS overlaps 20 nt at the N-terminus with CBO2147.
 
 
 
 0.892
CBO2147
ABC transporter, ATP-binding protein; CDS overlaps 20 nt at the C-terminus with CBO2146.
 
 
 0.841
CBO0272
Similar to Clostridium tetani two-component response regulator ctc00392 SWALL:Q898Q1 (EMBL:AE015937) (231 aa) fasta scores: E(): 1.4e-78, 90.47 38d in 231 aa.
 
 
 0.831
CBO1392
Putative ABC transporter, permease protein.
 
 
 
 0.813
CBO0318
Similar to Bacillus cereus two-component response regulator bc4835 SWALL:Q816J5 (EMBL:AE017013) (231 aa) fasta scores: E(): 7.7e-51, 60.08 38d in 228 aa.
 
 
 0.794
CBO1394
Two-component response regulator.
 
 
 0.787
CBO1391A
Putative ABC transporter, ATP-binding protein.
 
 
 0.774
CBO0321
Similar to Bacillus cereus ABC transporter ATP-binding protein bc4839 SWALL:Q816J1 (EMBL:AE017013) (250 aa) fasta scores: E(): 7.3e-58, 68.16 38d in 245 aa.
 
 
 0.759
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.