STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBO2139ABC transporter, ATP-binding protein. (291 aa)    
Predicted Functional Partners:
CBO2138
Putative membrane protein; N-terminus to codon 245 is similar to Clostridium tetani hypothetical protein ctc00646 SWALL:Q897T1 (EMBL:AE015938) (234 aa) fasta scores: E(): 0.023, 21.75 id in 216 aa, and the C-terminus from codon 245 is similar to Thermoanaerobacter tengcongensis aminopeptidase N PepN or tte2694 SWALL:Q8R6U0 (EMBL:AE013209) (479 aa) fasta scores: E(): 0.0027, 21.49 38d in 507 aa. CDS overlaps CBO2137 8 nt at the C-terminus.
 
 
   0.926
CBO2137
Putative membrane protein; CDS overlaps CBO2138 8 nt at the N-terminus.
  
    0.809
CBO2140
Putative ABC transporter, permease protein.
  
    0.604
CBO2135
Two-component sensor kinase.
    
  0.455
CBO0558A
GntR-family transcriptional regulator.
  
    0.450
CBO2136
Two-component system response regulator.
       0.446
atpA-2
ATP synthase alpha chain; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit.
  
 
   0.400
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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