STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBO2141Conserved hypothetical protein. (361 aa)    
Predicted Functional Partners:
hymB
Putative electron-transferring subunit of iron-only hydrogenase.
  
  
 0.709
etfB
Electron transfer flavoprotein beta-subunit.
  
 
 0.641
etfB1
Electron transfer flavoprotein beta-subunit.
  
 
 0.641
CBO3198
Electron transfer flavoprotein beta-subunit.
  
 
 0.641
etfB2
Electron transfer flavoprotein beta-subunit.
  
 
 0.641
CBO1505
Putative oxidoreductase.
 
  
 0.576
etfA2
Electron transfer flavoprotein alpha-subunit; N-terminal extension relative to homologues.
  
 
 0.563
nifJ1
Putative pyruvate-flavodoxin oxidoreductase; Also similar to CBO2760 (65.74 38d).
  
  
 0.554
CBO2402
UbiA prenyltransferase family protein; Belongs to the UbiA prenyltransferase family.
  
  
 0.505
CBO0364
Putative phosphatase; Similar to Clostridium tetani ser/thr and tyr protein phosphatase ctc02044 SWALL:Q892P9 (EMBL:AE015943) (208 aa) fasta scores: E(): 6e-36, 43.35 38d in 203 aa.
  
  
 0.500
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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