STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBO2146ABC transporter, permease protein; CDS overlaps 20 nt at the N-terminus with CBO2147. (667 aa)    
Predicted Functional Partners:
CBO2147
ABC transporter, ATP-binding protein; CDS overlaps 20 nt at the C-terminus with CBO2146.
 
 
 0.977
CBO2135
Two-component sensor kinase.
 
 
 
 0.892
CBO1391A
Putative ABC transporter, ATP-binding protein.
 
 
 0.879
CBO0321
Similar to Bacillus cereus ABC transporter ATP-binding protein bc4839 SWALL:Q816J1 (EMBL:AE017013) (250 aa) fasta scores: E(): 7.3e-58, 68.16 38d in 245 aa.
 
 
 0.858
CBO0274
Similar to Clostridium tetani ABC transporter ATP-binding protein ctc00394 SWALL:Q898P9 (EMBL:AE015937) (256 aa) fasta scores: E(): 1.2e-81, 95.31 38d in 256 aa.
 
 
 0.844
CBO1395
Two-component sensor histidine kinase.
 
 
 
 0.823
CBO0319
Two-component sensor kinase; Similar to Bacillus cereus two component system histidine kinase bc4836 SWALL:Q816J4 (EMBL:AE017013) (340 aa) fasta scores: E(): 4.2e-48, 41.53 38d in 325 aa.
 
 
 
 0.820
CBO0273
Similar to Clostridium tetani two-component sensor histidine kinase ctc00393 SWALL:Q898Q0 (EMBL:AE015937) (352 aa) fasta scores: E(): 9.2e-107, 85.22 38d in 352 aa.
 
 
 
 0.811
CBO1397
Putative ABC transporter, permease protein.
 
  
 0.727
CBO1396
ABC transporter, ATP-binding protein.
 
 
 0.710
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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