STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBO2147ABC transporter, ATP-binding protein; CDS overlaps 20 nt at the C-terminus with CBO2146. (255 aa)    
Predicted Functional Partners:
CBO2146
ABC transporter, permease protein; CDS overlaps 20 nt at the N-terminus with CBO2147.
 
 
 0.977
CBO2140
Putative ABC transporter, permease protein.
 
 
 0.906
CBO0087
Similar to Clostridium tetani ABC transporter permease protein ctc00486 SWALL:Q898G6 (EMBL:AE015937) (404 aa) fasta scores: E(): 1e-60, 47.66 38d in 407 aa,and to Thermoanaerobacter tengcongensis ABC-type transport systems, involved in lipoprotein release, permease components tte1198 SWALL:Q8RAL5 (EMBL:AE013082) (405 aa) fasta scores: E(): 4.1e-65, 50.73 38d in 406 aa.
 
   0.879
CBO1392
Putative ABC transporter, permease protein.
 
 
 0.848
CBO2135
Two-component sensor kinase.
 
 
 0.841
CBO0275
Similar to Clostridium tetani ABC transporter permease protein ctc00396 SWALL:Q898P8 (EMBL:AE015937) (655 aa) fasta scores: E(): 5.2e-203, 90.24 38d in 656 aa.
 
 
 0.808
CBO1397
Putative ABC transporter, permease protein.
 
 
 0.795
CBO0322
Similar to Bacillus cereus ABC transporter permease protein bc1995 SWALL:Q81EI1 (EMBL:AE017004) (626 aa) fasta scores: E(): 2e-63, 34.07 38d in 628 aa.
 
 
 0.778
CBO1395
Two-component sensor histidine kinase.
 
 
 0.764
CBO0319
Two-component sensor kinase; Similar to Bacillus cereus two component system histidine kinase bc4836 SWALL:Q816J4 (EMBL:AE017013) (340 aa) fasta scores: E(): 4.2e-48, 41.53 38d in 325 aa.
 
 
 0.736
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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