STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBO2155Putative membrane protein; No significant database matches. Contains coiled-coiled domain, residues 96 to 165. (244 aa)    
Predicted Functional Partners:
CBO0062
Putative exported peptidoglycan lytic protein; Similar to Listeria monocytogenes p45 precursor spl or lmo2505 SWALL:Q9RE04 (EMBL:AJ250194) (401 aa) fasta scores: E(): 2.4e-15, 31.18 38d in 388 aa, and to Clostridium acetobutylicum cell wall-associated hydrolase cac0308 SWALL:Q97M90 (EMBL:AE007545) (392 aa) fasta scores: E(): 2.2e-27, 36.84 38d in 380 aa.
  
  
 0.721
CBO2809
Putative exported protein.
  
  
 0.591
pcrA
ATP-dependent DNA helicase.
 
   
 0.493
CBO3123
Conserved hypothetical protein.
  
    0.488
CBO3161
Conserved hypothetical repetative protein; Contains 6x degenerate repeat.
  
    0.488
CBO0013
Similar to Clostridium acetobutylicum predicted dehydrogenase with iron-sulfur domain cac0012 SWALL:Q97N26 (EMBL:AE007514) (467 aa) fasta scores: E(): 1.2e-65,44.63 38d in 475 aa, and to Clostridium tetani dehydrogenase, fad-dependent ctc00083 SWALL:Q899T4 (EMBL:AE015936) (475 aa) fasta scores: E(): 2.7e-91,55.48 38d in 465 aa.
  
  
 0.449
glpA
Putative anaerobic glycerol-3-phosphate dehydrogenase subunit a.
  
  
 0.449
CBO1722
Terminase large subunit.
  
     0.434
CBO2355
Terminase large subunit.
  
     0.433
CBO2156
Putative membrane protein.
  
    0.429
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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