STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBO2179Conserved hypothetical protein. (229 aa)    
Predicted Functional Partners:
CBO2178
Hypothetical protein; No significant database matches.
       0.724
CBO2175
Hypothetical protein; Poor database matches. C-terminal region is weakly similar to the N-terminus of Archaeoglobus fulgidus hypothetical protein Af1867 SWALL:O28412 (EMBL:AE000974) (1004 aa) fasta scores: E(): 1.1e-05, 25.3 38d in 486 aa.
     
 0.620
CBO0778
Putative membrane protein.
  
     0.618
CBO1013
Putative cyclase.
  
     0.592
CBO0856
Putative acetyltransferase.
  
     0.590
CBO0413
Putative lipoprotein; Similar to Clostridium tetani conserved protein ctc00544 SWALL:Q898B9 (EMBL:AE015937) (381 aa) fasta scores: E(): 8.2e-56, 44.75 38d in 362 aa.
  
     0.578
CBO2177
Putative membrane protein; No significant database matches.
       0.577
CBO0560
Putative membrane protein.
  
     0.576
CBO2173
Conserved hypothetical protein.
       0.576
CBO2176
Hypothetical protein; Poor database matches. Weakly similar to Porphyromonas gingivalis hypothetical protein PG1988 SWALL:AAQ66961 (EMBL:AE017178) (480 aa) fasta scores: E(): 0.076, 25.52 38d in 474 aa.
       0.575
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.