STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBO2188Amidohydrolase family protein. (450 aa)    
Predicted Functional Partners:
CBO2189
Putative uric acid permease.
 
    0.574
CBO2187
Putative exported protein; C-terminus is similar to the C-terminal region of Escherichia coli acetyl esterase Aes or b0476 SWALL:AES_ECOLI (SWALL:P23872) (319 aa) fasta scores: E(): 9.8e-14, 26.78 38d in 280 aa.
     
 0.438
xdhAC
In Escherichia coli the molybdenum binding and iron-sulfur binding domains of xanthine dehydrogenase are carried on two separate genes, wheareas in this case they are present on a single gene.
 
  
 0.404
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.