STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hadIActivator of 2-hydroxyisocaproyl-CoA dehydratase. (257 aa)    
Predicted Functional Partners:
CBO3193
Conserved hypothetical protein.
     0.914
hadC
Subunit of oxygen-sensitive 2-hydroxyisocaproyl-CoA dehydratase.
 
 0.888
fldC
R-phenyllactate dehydratase small subunit.
 
 0.867
hadB
Subunit of oxygen-sensitive 2-hydroxyisocaproyl-CoA dehydratase; Similar to Acidaminococcus fermentans (R)-2-hydroxyglutaryl-CoA dehydratase alpha-subunit HgdA SWALL:HGDA_ACIFE (SWALL:P11569) (476 aa) fasta scores: E(): 1e-53, 39.91 38d in 471 aa. CDS contains internal deletion in comparison to the A. fermentans protein. Full length CDS is similar to Clostridium sporogenes r-phenyllactate dehydratase medium subunit FldB SWALL:Q93AL9 (EMBL:AF420489) (407 aa) fasta scores: E(): 1.7e-84, 51.47 38d in 408 aa.
 
 
 0.862
fldB
R-phenyllactate dehydratase medium subunit.
 
 
 0.838
CBO3629
2-hydroxyacyl-CoA dehydratase beta-subunit.
 
 0.808
CBO3245
2-hydroxyacyl-CoA dehydratase beta-subunit; Also similar to CBO2197 (24.4 38d), CBO2202 (29.2 id), CBO3246 (37.9), CBO3289 (26.1 38d), CBO3629 (38.9 id).
 
 0.794
CBO2201
Putative 2-hydroxyacyl-CoA dehydratase,D-component.
 
 
 0.782
CBO3244
2-hydroxyacyl-CoA dehydratase beta-subunit; Also similar to CBO2197 (24.4 38d), CBO2202 (29.2 id), CBO3245 (37.9), CBO3289 (26.1 38d), CBO3629 (38.9 id).
 
 0.764
CBO2193
Putative membrane protein; CDS is extended at the C-terminus in comparison to similar proteins. N-terminal region is similar to Pyrococcus horikoshii hypothetical protein PH0137 SWALL:O57877 (EMBL:AP000001) (378 aa) fasta scores: E(): 6.4e-17, 26.5 38d in 381 aa.
 
     0.733
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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