Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CBO2209Conserved hypothetical protein. (445 aa)    
Predicted Functional Partners:
pdxA
Putative 4-hydroxythreonine-4-phosphate dehydrogenase; Belongs to the PdxA family.
 
     0.955
CBO2207
Pfam match to entry PF00903 Glyoxalase,Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily, score 18.6, E-value 3.3e-05.
 
   
 0.880
CBO2210
DeoR family regulatory proteins.
 
   
 0.742
kdgT
Similar to Erwinia chrysanthemi 2-keto-3-deoxygluconate permease KdgT SWALL:KDGT_ERWCH (SWALL:P15701) (339 aa) fasta scores: E(): 2.4e-33, 38.43 id in 307 aa, and to Erwinia carotovora 2-keto-3-deoxygluconate permease KdgT SWALL:KDGT_ERWCA (SWALL:Q9XB52) (318 aa) fasta scores: E(): 3.1e-36, 41.29 id in 310 aa.
 
   
 0.659
Your Current Organism:
Clostridium botulinum A ATCC 3502
NCBI taxonomy Id: 413999
Other names: C. botulinum A str. ATCC 3502, Clostridium botulinum A str. ATCC 3502, Clostridium botulinum A strain ATCC 3502
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